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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
BRCA rs2283797 chr22:22315312 A/G 1.38E-5 1028 17.27 21.5 21.98 KM Plot
BRCA rs2289130 chr18:44626630 T/G 2.08E-5 1024 21.57 22.2 18.13 KM Plot
BRCA rs2289131 chr18:44602864 G/A 2.2E-5 1019 21.73 22.2 18.13 KM Plot
BRCA rs2289132 chr18:44602292 G/A 2.2E-5 1019 21.73 22.2 18.13 KM Plot
BRCA rs2424226 chr20:18882220 G/T 2.06E-9 1028 16.8 21.33 21.62 KM Plot
BRCA rs244821 chr16:84271908 A/G 4.64E-5 1028 18.6 18.98 22 KM Plot
BRCA rs2464962 chr7:54843902 A/G 8.08E-6 1028 21.43 24.23 12.17 KM Plot
BRCA rs2610940 chr8:21073945 A/G 1.22E-5 1028 14.5 19.2 22.2 KM Plot
BRCA rs262527 chr2:63900292 C/G 4.6E-7 1028 19.5 22.1 21.43 KM Plot
BRCA rs2699215 chr7:54826323 A/C 7.89E-6 1028 21.43 23.83 12.17 KM Plot
BRCA rs2699219 chr7:54845211 C/T 8.08E-6 1028 21.43 24.23 12.17 KM Plot
BRCA rs2699227 chr7:54827560 C/T 7.89E-6 1028 21.43 23.83 12.17 KM Plot
BRCA rs2699228 chr7:54830203 C/T 7.89E-6 1028 21.43 23.83 12.17 KM Plot
BRCA rs2699239 chr7:54842549 C/G 8.61E-6 1028 21.43 23.68 12.17 KM Plot
BRCA rs2699242 chr7:54843648 A/G 7.71E-6 1027 21.45 25.02 12.17 KM Plot